Pseudomonas aeruginosa PAO1, PA5161 (rmlB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcription initiation site P1 | 5810253 | 5810253 | + |
|
22262098 | Details |
| -12 element | 5810240 | 5810242 | + |
|
22262098 | Details |
| -24 element | 5810228 | 5810230 | + |
|
22262098 | Details |
| transcription initiation site P2 | 5810200 | 5810200 | + |
|
22262098 | Details |
| -10 element (sigma s) | 5810187 | 5810192 | + |
|
22262098 | Details |
| -35 element (sigma s) | 5810163 | 5810168 | + |
|
22262098 | Details |
| rml box (RhlR binding site) | 5810146 | 5810165 | + |
|
22262098 | Details |
| RhlR binding site | 5810146 | 5810165 | + |
ECO:0000314
direct assay evidence used in manual assertion |
22262098 | Details |
| Inverted repeat: AAAAGCCCCGC-N5-GCGGGGCTTTT | 5810056 | 5810082 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 1410 | 5810054 | 5810084 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 1411 | 5810060 | 5810078 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Shine-Dalgarno sequence | 5810270 | 5810272 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: TGCCCGCGCCGTCG-N67-CGACGGCGCGGGCA | 5811569 | 5811663 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |