Pseudomonas aeruginosa PAO1, PA1156 (nrdA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA1156
Name
nrdA
Replicon chromosome
Genomic location 1251418 - 1254309 (- strand)

Cross-References

RefSeq NP_249847.1
GI 15596353
Affymetrix PA1156_nrdA_at
Entrez 877716
GenBank AAG04545.1
INSDC AAG04545.1
NCBI Locus Tag PA1156
protein_id(GenBank) gb|AAG04545.1|AE004545_8|gnl|PseudoCAP|PA1156
TIGR NTL03PA01157
UniParc UPI00000C527A
UniProtKB Acc Q9I4I1
UniProtKB ID Q9I4I1_PSEAE
UniRef100 UniRef100_W0YQ69
UniRef50 UniRef50_Q607W9
UniRef90 UniRef90_A4VK21

Product

Feature Type CDS
Coding Frame 1
Product Name
NrdA, catalytic component of class Ia ribonucleotide reductase
Product Name Confidence: Class 1
Synonyms NrdA, catalytic component of class Ia ribonucleotide reductase
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected using LC-MS/MS (107.11 kDa, PMID:21751344)
Detected by MALDI-TOF/TOF (PMID:19333994).
Charge (pH 7) -14.68
Kyte-Doolittle Hydrophobicity Value -0.309
Molecular Weight (kDa) 107.1
Isoelectric Point (pI) 5.69

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Vesicle Class 1
Cytoplasmic Class 3
Additional evidence for subcellular localization

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5IM3 OXIDOREDUCTASE 03/05/16 Crystal structure of the class I ribonucleotide reductase from Pseudomonas aeruginosa in complex with dATP PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) 2.298 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 603 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001115 (551 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1156
Search term: nrdA

Human Homologs

Ensembl 97, assembly GRCh38.p12
ribonucleotide reductase catalytic subunit M1 [Source:HGNC Symbol;Acc:HGNC:10451]
E-value: 2.5e-157
Percent Identity: 41.0

References

Ribonucleotide reductase modularity: Atypical duplication of the ATP-cone domain in Pseudomonas aeruginosa.
Torrents E, Westman M, Sahlin M, Sjöberg BM
J Biol Chem 2006 Sep 1;281(35):25287-96
PubMed ID: 16829681
Promoter identification and expression analysis of Salmonella typhimurium and Escherichia coli nrdEF operons encoding one of two class I ribonucleotide reductases present in both bacteria.
Jordan A, Aragall E, Gibert I, Barbe J
Mol. Microbiol. 1996 Feb;19(4):777-90
PubMed ID: 8820648
Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.
Stephens RS, Kalman S, Lammel C, Fan J, Marathe R, Aravind L, Mitchell W, Olinger L, Tatusov RL, Zhao Q, Koonin EV, Davis RW
Science 1998 Oct;282(5389):754-9
PubMed ID: 9784136
Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile opportunistic pathogen.
Imperi F, Ciccosanti F, Perdomo AB, Tiburzi F, Mancone C, Alonzi T, Ascenzi P, Piacentini M, Visca P, Fimia GM
Proteomics 2009 Apr;9(7):1901-15
PubMed ID: 19333994
Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.
Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS
Proteomics 2011 Aug;11(16):3424-9
PubMed ID: 21751344