Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0000162 | tryptophan biosynthetic process | Inferred from Sequence or Structural Similarity | ECO:0000250 sequence similarity evidence used in manual assertion |
3127651 | Reviewed by curator |
Molecular Function | GO:0004834 | tryptophan synthase activity | Inferred from Sequence or Structural Similarity | ECO:0000250 sequence similarity evidence used in manual assertion |
3127651 | Reviewed by curator |
Biological Process | GO:0000162 | tryptophan biosynthetic process | Non-traceable Author Statement | ECO:0000303 non-traceable author statement used in manual assertion |
3127651 | Reviewed by curator |
Biological Process | GO:0006520 | cellular amino acid metabolic process | Inferred from Sequence or Structural Similarity | ECO:0000250 sequence similarity evidence used in manual assertion |
3127651 | Reviewed by curator |
Molecular Function | GO:0016833 | oxo-acid-lyase activity | Inferred from Sequence or Structural Similarity | ECO:0000044 sequence similarity evidence |
||
Biological Process | GO:0006568 | tryptophan metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00263
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0000162 | tryptophan biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001413
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0004834 | tryptophan synthase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00263
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | pae01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCyc | TRPSYN-PWY | L-tryptophan biosynthesis | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
PseudoCyc | ALL-CHORISMATE-PWY | superpathway of chorismate metabolism | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
PseudoCAP | Phenylalanine, tyrosine and tryptophan biosynthesis |
ECO:0000037
not_recorded |
|||
KEGG | pae01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCyc | COMPLETE-ARO-PWY | superpathway of aromatic amino acid biosynthesis | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
KEGG | pae01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | IPR001926 | Tryptophan synthase beta chain-like, PALP domain | 58 | 383 | 3.6E-46 |
SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 8 | 394 | 0.0 |
PANTHER | PTHR48077 | TRYPTOPHAN SYNTHASE-RELATED | IPR023026 | Tryptophan synthase beta chain/beta chain-like | 14 | 399 | 0.0 |
PIRSF | PIRSF001413 | Trp_syn_beta | IPR023026 | Tryptophan synthase beta chain/beta chain-like | 4 | 402 | 0.0 |
Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 59 | 390 | 0.0 |
NCBIfam | TIGR00263 | JCVI: tryptophan synthase subunit beta | IPR006654 | Tryptophan synthase, beta chain | 12 | 395 | 0.0 |
Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 14 | 211 | 0.0 |
CDD | cd06446 | Trp-synth_B | IPR006654 | Tryptophan synthase, beta chain | 32 | 392 | 0.0 |
Hamap | MF_00133 | Tryptophan synthase beta chain [trpB]. | IPR023026 | Tryptophan synthase beta chain/beta chain-like | 7 | 396 | 52.810528 |
FunFam | G3DSA:3.40.50.1100:FF:000001 | Tryptophan synthase beta chain | - | - | 78 | 210 | 1.4E-63 |
FunFam | G3DSA:3.40.50.1100:FF:000004 | Tryptophan synthase beta chain | - | - | 211 | 389 | 4.1E-85 |