Pseudomonas aeruginosa PAO1, PA0163

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02311
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 167 264 21.42
Gene3D G3DSA:1.10.10.60 165 265 1.4E-19
SUPERFAMILY SSF51182 IPR011051 RmlC-like cupin domain superfamily 12 189 7.56E-18
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 217 263 2.46E-5
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 37 130 3.4E-7
Gene3D G3DSA:2.60.120.10 IPR014710 RmlC-like jelly roll fold 19 97 1.2E-5
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 180 262 9.7E-20
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 186 263 1.4E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.