Pseudomonas aeruginosa PAO1, PA1662 (clpV2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0033103 protein secretion by the type VI secretion system
IGC
Inferred from Genomic Context 		ECO:0000317
genomic context evidence used in manual assertion		 18524912 Reviewed by curator
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Putative enzymes Other PAO1 genes in this class
Protein secretion/export apparatus Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 419 439 -
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 611 776 5.3E-42
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 611 772 2.8E-9
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 20 128 1.02E-10
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 722 736 2.0E-33
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 782 874 1.8E-7
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 15 865 0.0
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 349 441 6.6E-29
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 7 152 1.9E-24
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 210 341 1.0E-9
CDD cd00009 AAA - - 190 341 4.11815E-15
Coils Coil Coil - - 451 471 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 560 857 8.6E-58
Pfam PF02861 Clp amino terminal domain, pathogenicity island component IPR004176 Clp, repeat (R) domain 29 75 3.4E-4
MobiDBLite mobidb-lite consensus disorder prediction - - 493 512 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 161 349 2.4E-70
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 615 633 2.0E-33
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 350 558 3.5E-46
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 660 678 2.0E-33
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 578 780 1.48868E-82
Coils Coil Coil - - 475 502 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 167 544 4.8E-72
Gene3D G3DSA:1.10.8.60 - - - 785 874 1.9E-9
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 26 863 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 564 780 3.6E-66
FunFam G3DSA:3.40.50.300:FF:000010 Chaperone clpB 1, putative - - 158 349 2.2E-83
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 205 350 1.3E-10
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 564 780 5.0E-82
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 787 857 3.0E-10
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 689 707 2.0E-33
Coils Coil Coil - - 517 537 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.