Pseudomonas aeruginosa PAO1, PA1776 (sigX)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0030307 positive regulation of cell growth
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
10438740 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
IDA
Inferred from Direct Assay
ECO:0000002
direct assay evidence
Molecular Function GO:0016987 sigma factor activity
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
10438740 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.1740.10 - - - 2 107 8.4E-28
Coils Coil Coil - - 145 165 -
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 108 157 6.4E-12
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 99 160 1.25E-10
PANTHER PTHR43133 RNA POLYMERASE ECF-TYPE SIGMA FACTO IPR039425 RNA polymerase sigma-70 like 3 159 1.5E-34
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 3 91 1.88E-26
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 108 162 1.2E-12
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 8 75 1.9E-19
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 4 158 3.2E-30
FunFam G3DSA:1.10.10.10:FF:000282 RNA polymerase sigma factor SigX - - 105 160 2.1E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.