Pseudomonas aeruginosa PAO1, PA1776 (sigX)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0030307	positive regulation of cell growth	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	10438740	Reviewed by curator
Molecular Function	GO:0016987	sigma factor activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	10438740	Reviewed by curator
Biological Process	GO:0006355	regulation of transcription, DNA-templated	IDA Inferred from Direct Assay	ECO:0000002 direct assay evidence
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02937	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02937	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02937	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:1.10.1740.10	-	-	-	2	107	8.4E-28
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	99	160	1.25E-10
Coils	Coil	Coil	-	-	145	165	-
NCBIfam	TIGR02937	JCVI: sigma-70 family RNA polymerase sigma factor	IPR014284	RNA polymerase sigma-70 like domain	4	158	3.2E-30
SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	IPR013325	RNA polymerase sigma factor, region 2	3	91	1.88E-26
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	108	162	1.2E-12
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	8	75	1.9E-19
PANTHER	PTHR43133	RNA POLYMERASE ECF-TYPE SIGMA FACTO	IPR039425	RNA polymerase sigma-70 like	3	159	1.5E-34
FunFam	G3DSA:1.10.10.10:FF:000282	RNA polymerase sigma factor SigX	-	-	105	160	2.1E-41
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	108	157	6.4E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.