Pseudomonas aeruginosa PAO1, PA1898 (qscR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| qsc102 promoter | 2068757 | 2069006 | - |
|
11544214 | Details |
| lux-box upstream of qsc102 gene | 2068766 | 2069015 | - |
|
11544214 | Details |
| QscR protected fragment at PA1897 gene | 2068766 | 2069015 | - |
|
16390453 | Details |
| VqsR binding site | 2069302 | 2069319 | + |
|
22505688 | Details |
| LasR binding site | 2068996 | 2069015 | - |
ECO:0000314
direct assay evidence used in manual assertion |
11544214 | Details |
| QscR binding site | 2068990 | 2069015 | - |
ECO:0000314
direct assay evidence used in manual assertion |
17877713 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: ATATCTCGAGA-N43-TCTCGAGATAT | 2069510 | 2069574 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: TCTCCTGGAA-N30-TTCCAGGAGA | 2069732 | 2069781 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CAGCATGCTG-N74-CAGCATGCTG | 2069864 | 2069957 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AmrZ binding site | 2070529 | 2070541 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| AmrZ binding site | 2070535 | 2070547 | + |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| Inverted repeat: TCCGGCCATTC-N3-GAATGGCCGGA | 2070243 | 2070267 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |