Pseudomonas aeruginosa PAO1, PA3543 (algK)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0050896 response to stimulus
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Cellular Component GO:0009276 Gram-negative-bacterium-type cell wall
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0042121 alginic acid biosynthetic process
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 9457868 Reviewed by curator
Biological Process GO:0042121 alginic acid biosynthetic process
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 9457868 Reviewed by curator
Biological Process GO:0042710 biofilm formation
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 9457868 Reviewed by curator
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.25.40.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class
Adaptation, Protection Other PAO1 genes in this class
Cell wall / LPS / capsule Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCyc PWY-6082 alginate biosynthesis 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747
PseudoCAP Alginate biosynthesis ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00671 sel1 IPR006597 Sel1-like repeat 381 416 3.3
MobiDBLite mobidb-lite consensus disorder prediction - - 436 469 -
SMART SM00671 sel1 IPR006597 Sel1-like repeat 310 344 0.018
SMART SM00671 sel1 IPR006597 Sel1-like repeat 62 96 26.0
NCBIfam NF038194 NCBIFAM: alginate biosynthesis TPR repeat lipoprotein AlgK - - 13 459 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 436 475 -
PANTHER PTHR11102 SEL-1-LIKE PROTEIN - - 274 430 1.9E-20
SUPERFAMILY SSF81901 HCP-like - - 256 449 7.19E-19
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain IPR011990 Tetratricopeptide-like helical domain superfamily 28 461 1.3E-106
SMART SM00671 sel1 IPR006597 Sel1-like repeat 345 380 1.7E-4

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.