Pseudomonas aeruginosa PAO1, PA3744 (rimM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Cellular Component GO:0044391 ribosomal subunit
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 9422595 Reviewed by curator
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02273
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043022 ribosome binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02273
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02273
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR33692 RIBOSOME MATURATION FACTOR RIMM IPR011961 Ribosome maturation factor RimM 6 173 1.2E-37
Gene3D G3DSA:2.40.30.60 RimM IPR036976 RimM, N-terminal domain superfamily 3 94 6.7E-30
Hamap MF_00014 Ribosome maturation factor RimM [rimM]. IPR011961 Ribosome maturation factor RimM 8 175 24.318693
NCBIfam TIGR02273 JCVI: ribosome maturation factor RimM IPR011961 Ribosome maturation factor RimM 8 174 6.0E-52
Gene3D G3DSA:2.30.30.240 - - - 101 175 1.1E-25
Pfam PF05239 PRC-barrel domain IPR027275 PRC-barrel domain 98 170 2.1E-5
SUPERFAMILY SSF50447 Translation proteins IPR009000 Translation protein, beta-barrel domain superfamily 7 94 1.73E-25
SUPERFAMILY SSF50346 PRC-barrel domain IPR011033 PRC-barrel-like superfamily 101 175 8.63E-21
Pfam PF01782 RimM N-terminal domain IPR002676 RimM, N-terminal 10 92 3.3E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.