Pseudomonas aeruginosa PAO1, PA4230 (pchB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009697 salicylic acid biosynthetic process
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 7500944 Reviewed by curator
Biological Process GO:0009697 salicylic acid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01803
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0046417 chorismate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.59.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016835 carbon-oxygen lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01803
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004106 chorismate mutase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01803
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class
Transport of small molecules Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01053 Biosynthesis of siderophore group nonribosomal peptides 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc PWY-6406 salicylate biosynthesis I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747
PseudoCAP Pyochelin synthesis ECO:0000037
not_recorded
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01803 JCVI: chorismate mutase family protein IPR008241 Salicylate biosynthesis protein PchB 10 90 5.5E-39
SMART SM00830 CM_2_4 IPR002701 Chorismate mutase II, prokaryotic-type 14 93 4.0E-23
FunFam G3DSA:1.20.59.10:FF:000012 Isochorismate pyruvate lyase - - 1 101 6.9E-70
PIRSF PIRSF029775 Isochor_pyr_lyas IPR008241 Salicylate biosynthesis protein PchB 1 101 1.5E-40
Gene3D G3DSA:1.20.59.10 Chorismate mutase IPR036979 Chorismate mutase domain superfamily 1 101 3.6E-27
PANTHER PTHR38041 CHORISMATE MUTASE - - 3 98 4.3E-22
Pfam PF01817 Chorismate mutase type II IPR002701 Chorismate mutase II, prokaryotic-type 14 90 1.9E-14
SUPERFAMILY SSF48600 Chorismate mutase II IPR036263 Chorismate mutase type II superfamily 1 94 5.36E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.