Pseudomonas aeruginosa PAO1, PA4269 (rpoC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006351 transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 6287430 Reviewed by curator
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Purine metabolism ECO:0000037
not_recorded
PseudoCAP Pyrimidine metabolism ECO:0000037
not_recorded
KEGG pae03020 RNA polymerase 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.132.30:FF:000003 DNA-directed RNA polymerase subunit beta - - 638 790 1.1E-76
FunFam G3DSA:4.10.860.120:FF:000001 DNA-directed RNA polymerase subunit beta - - 12 132 5.5E-69
Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 14 1387 19.055861
Coils Coil Coil - - 191 211 -
Gene3D G3DSA:4.10.860.120 RNA polymerase II, clamp domain IPR044893 RNA polymerase Rpb1, clamp domain superfamily 8 142 1.5E-24
Gene3D G3DSA:2.40.50.100 - - - 948 1022 1.1E-24
Gene3D G3DSA:2.40.40.20 - - - 332 486 5.6E-48
Gene3D G3DSA:2.40.50.100 - - - 1151 1215 2.7E-68
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase - - 16 1363 0.0
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 389 485 2.7E-28
CDD cd01609 RNAP_beta'_N - - 15 813 0.0
Gene3D G3DSA:2.40.50.100 - - - 1023 1126 3.9E-33
MobiDBLite mobidb-lite consensus disorder prediction - - 1367 1399 -
Pfam PF04998 RNA polymerase Rpb1, domain 5 IPR007081 RNA polymerase Rpb1, domain 5 766 1316 2.8E-77
SMART SM00663 rpolaneu7 IPR006592 RNA polymerase, N-terminal 235 514 0.0
Gene3D G3DSA:1.10.40.90 - - - 370 413 2.4E-21
PANTHER PTHR19376 DNA-DIRECTED RNA POLYMERASE IPR045867 DNA-directed RNA polymerase, subunit beta-prime 23 1363 0.0
Gene3D G3DSA:1.10.274.100 RNA polymerase Rpb1, domain 3 IPR042102 RNA polymerase Rpb1, domain 3 superfamily 489 637 4.3E-44
Pfam PF04983 RNA polymerase Rpb1, domain 3 IPR007066 RNA polymerase Rpb1, domain 3 489 643 5.7E-30
Gene3D G3DSA:1.10.1790.20 - - - 1135 1314 2.7E-68
CDD cd02655 RNAP_beta'_C - - 907 1363 8.21481E-83
NCBIfam TIGR02386 JCVI: DNA-directed RNA polymerase subunit beta' IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 19 1366 0.0
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 344 381 2.4E-7
Pfam PF05000 RNA polymerase Rpb1, domain 4 IPR007083 RNA polymerase Rpb1, domain 4 674 763 3.4E-20
Gene3D G3DSA:1.10.132.30 - IPR038120 RNA polymerase Rpb1, funnel domain superfamily 638 790 7.7E-68
Gene3D G3DSA:1.10.150.390 - - - 1316 1376 6.1E-27
FunFam G3DSA:1.10.40.90:FF:000001 DNA-directed RNA polymerase subunit beta - - 372 413 3.5E-22
FunFam G3DSA:1.10.150.390:FF:000002 DNA-directed RNA polymerase subunit beta'' - - 1316 1376 1.3E-31
Pfam PF04997 RNA polymerase Rpb1, domain 1 IPR007080 RNA polymerase Rpb1, domain 1 16 342 2.6E-90

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.