Pseudomonas aeruginosa PAO1, PA4307 (pctC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006935 chemotaxis
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 9353923 Reviewed by curator
Biological Process GO:0006935 chemotaxis
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0050896 response to stimulus
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0030261 chromosome condensation

Molecular Function GO:0016597 amino acid binding
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 23650915 Reviewed by curator
Biological Process GO:0043200 response to amino acid
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 9353923 Reviewed by curator
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PAO1 genes in this class
Chemotaxis Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Chemotactic transducer (MCP) ECO:0000037
not_recorded
KEGG pae02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 323 632 3.66E-76
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 37 263 2.5E-32
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 414 597 2.1E-44
Coils Coil Coil - - 438 458 -
CDD cd11386 MCP_signal - - 397 596 1.05197E-58
SMART SM00304 HAMP_11 IPR003660 HAMP domain 301 355 7.7E-16
CDD cd12913 PDC1_MCP_like - - 60 179 6.73837E-19
CDD cd12912 PDC2_MCP_like - - 181 268 2.72746E-16
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 301 632 1.3E-101
Pfam PF00672 HAMP domain IPR003660 HAMP domain 299 351 6.5E-14
Gene3D G3DSA:1.10.287.950 - - - 302 632 2.6E-76
SMART SM00304 HAMP_11 IPR003660 HAMP domain 390 450 18.0
Coils Coil Coil - - 501 524 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 66 177 6.1E-60
CDD cd06225 HAMP - - 304 350 2.54394E-12
Gene3D G3DSA:3.30.450.20 PAS domain - - 55 275 6.1E-60
FunFam G3DSA:3.30.450.20:FF:000048 Methyl-accepting chemotaxis protein - - 66 177 5.2E-30
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 370 631 2.8E-98
MobiDBLite mobidb-lite consensus disorder prediction - - 408 427 -
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 177 631 2.1E-118
SUPERFAMILY SSF103190 Sensory domain-like IPR029151 Periplasmic sensor-like domain superfamily 93 184 8.89E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.