Pseudomonas aeruginosa PAO1, PA4890 (desT)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| DesT binding site | 5486211 | 5486226 | + |
ECO:0000314
direct assay evidence used in manual assertion |
17400767 | Details |
| DesT binding site | 5486253 | 5486270 | - |
ECO:0000314
direct assay evidence used in manual assertion |
18524913 | Details |
| Inverted repeat: TCAGTGAACG-N45-CGTTCACTGA | 5486208 | 5486272 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 5486346 | 5486349 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GCCGCCGATC-N55-GATCGGCGGC | 5486884 | 5486958 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Shine-Dalgarno sequence | 5487204 | 5487206 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |