Pseudomonas fluorescens Pf0-1, Pfl01_0047

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00512
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00512
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfo02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00672 HAMP domain IPR003660 HAMP domain 194 245 7.0E-9
PANTHER PTHR44936 SENSOR PROTEIN CREC - - 4 594 2.7E-78
Pfam PF16767 Sensor domain of alginate biosynthesis sensor protein KinB IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain 39 159 4.7E-30
Gene3D G3DSA:1.10.287.130 - - - 366 445 1.0E-15
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 558 576 2.4E-17
Pfam PF08448 PAS fold IPR013656 PAS fold-4 265 371 1.1E-12
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 582 595 2.4E-17
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 252 368 6.11E-14
FunFam G3DSA:3.30.565.10:FF:000006 Sensor histidine kinase WalK - - 449 596 1.0E-36
Gene3D G3DSA:1.10.8.500 HAMP domain in histidine kinase - - 195 246 2.8E-6
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 527 541 2.4E-17
Gene3D G3DSA:1.20.120.880 Histidine kinase (KinB), sensor domain IPR038320 KinB, N-terminal domain superfamily 38 169 1.2E-46
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 433 594 1.7E-44
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 361 444 6.67E-16
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 377 444 5.9E-12
SUPERFAMILY SSF158472 HAMP domain-like - - 196 245 7.98E-7
CDD cd06225 HAMP - - 201 243 2.44142E-7
SMART SM00304 HAMP_11 IPR003660 HAMP domain 196 248 3.3E-9
CDD cd00075 HATPase - - 495 594 3.36716E-34
CDD cd00130 PAS IPR000014 PAS domain 268 367 1.20777E-4
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 376 444 8.6E-17
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 449 596 9.1E-44
Gene3D G3DSA:3.30.450.20 PAS domain - - 247 365 1.1E-19
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 545 555 2.4E-17
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 490 596 1.1E-29
CDD cd19409 KinB_sensor IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain 45 158 4.9556E-38
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 374 440 4.93778E-12
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 258 374 1.8E-9
SMART SM00091 pas_2 IPR000014 PAS domain 259 325 2.6E-4
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 491 593 4.3E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.