Pseudomonas fluorescens Pf0-1, Pfl01_2247

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00038	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF46894	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors	IPR036693	Transcription factor LuxR-like, autoinducer-binding domain superfamily	14	167	2.09E-12
PANTHER	PTHR44688	-	-	-	99	235	7.0E-17
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	207	219	4.4E-9
SUPERFAMILY	SSF46894	C-terminal effector domain of the bipartite response regulators	IPR016032	Signal transduction response regulator, C-terminal effector	163	236	2.18E-17
Gene3D	G3DSA:3.30.450.80	-	IPR036693	Transcription factor LuxR-like, autoinducer-binding domain superfamily	8	163	7.9E-14
CDD	cd06170	LuxR_C_like	IPR000792	Transcription regulator LuxR, C-terminal	177	233	7.92151E-17
Pfam	PF00196	Bacterial regulatory proteins, luxR family	IPR000792	Transcription regulator LuxR, C-terminal	177	231	3.1E-14
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	170	237	1.1E-18
Pfam	PF03472	Autoinducer binding domain	IPR005143	Transcription factor LuxR-like, autoinducer-binding domain	25	159	2.8E-15
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	191	207	4.4E-9
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	177	191	4.4E-9
SMART	SM00421	luxrmega5	IPR000792	Transcription regulator LuxR, C-terminal	174	231	8.9E-16
NCBIfam	TIGR03541	JCVI: LuxR family transcriptional regulatory, chaperone HchA-associated	IPR019941	Transcription regulator LuxR, chaperone HchA-associated	6	237	3.5E-115

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.