Pseudomonas fluorescens Pf0-1, Pfl01_5189

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0038023 signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015891 siderophore transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015343 siderophore transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07660
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01347 ligand_gated_channel - - 161 808 1.32914E-120
PANTHER PTHR32552 FERRICHROME IRON RECEPTOR-RELATED IPR039426 TonB-dependent receptor-like 131 808 0.0
SUPERFAMILY SSF56935 Porins - - 146 808 0.0
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 328 807 1.1E-57
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 266 808 1.5E-129
NCBIfam TIGR01783 JCVI: TonB-dependent siderophore receptor IPR010105 TonB-dependent siderophore receptor 157 807 2.8E-122
Pfam PF07660 Secretin and TonB N terminus short domain IPR011662 Secretin/TonB, short N-terminal domain 63 110 5.0E-7
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 157 254 4.4E-16
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 138 265 8.4E-23
FunFam G3DSA:2.40.170.20:FF:000005 TonB-dependent siderophore receptor - - 265 808 0.0
Gene3D G3DSA:3.55.50.30 - - - 31 130 3.0E-21
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 61 112 2.0E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.