Pseudomonas fluorescens F113, PSF113_0001 (dnaA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006270 DNA replication initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00362
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00362
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003688 DNA replication origin binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00362
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00362
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48295
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006275 regulation of DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00362
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSitePatterns PS01008 DnaA protein signature. IPR018312 Chromosomal replication control, initiator DnaA, conserved site 464 483 -
SMART SM00760 IPR013159 Chromosomal replication initiator, DnaA C-terminal 414 483 5.3E-44
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 464 483 6.5E-53
Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. IPR001957 Chromosomal replication control, initiator DnaA 1 505 34.206
CDD cd00009 AAA 186 329 1.65093E-18
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 236 250 6.5E-53
MobiDBLite mobidb-lite consensus disorder prediction 94 108 -
Gene3D G3DSA:1.10.8.60 337 407 3.1E-23
TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA IPR001957 Chromosomal replication control, initiator DnaA 4 504 0.0
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 268 282 6.5E-53
Gene3D G3DSA:3.40.50.300 170 336 1.0E-49
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 172 382 2.74E-44
SMART SM00382 IPR003593 AAA+ ATPase domain 203 408 8.0E-7
MobiDBLite mobidb-lite consensus disorder prediction 83 157 -
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 204 224 6.5E-53
SUPERFAMILY SSF48295 IPR010921 Trp repressor/replication initiator 402 504 8.63E-37
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 302 329 6.5E-53
CDD cd06571 Bac_DnaA_C IPR013159 Chromosomal replication initiator, DnaA C-terminal 415 504 7.51634E-42
Pfam PF08299 Bacterial dnaA protein helix-turn-helix IPR013159 Chromosomal replication initiator, DnaA C-terminal 415 483 9.0E-32
Gene3D G3DSA:3.30.300.180 IPR038454 DnaA, N-terminal domain superfamily 1 108 9.0E-32
Gene3D G3DSA:1.10.1750.10 IPR010921 Trp repressor/replication initiator 413 506 1.6E-37
MobiDBLite mobidb-lite consensus disorder prediction 141 155 -
Pfam PF11638 DnaA N-terminal domain IPR024633 DnaA N-terminal domain 1 62 2.3E-21
Pfam PF00308 Bacterial dnaA protein IPR013317 Chromosomal replication initiator protein DnaA 171 388 1.0E-100

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.