Pseudomonas fluorescens F113, PSF113_1348 (cmeC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.20.1600.10 Outer membrane efflux proteins (OEP) - - 56 464 0.0
Coils Coil Coil - - 222 249 -
Gene3D G3DSA:2.20.200.10 Outer membrane efflux proteins (OEP) - - 102 353 0.0
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 282 462 1.2E-28
PANTHER PTHR30203 OUTER MEMBRANE CATION EFFLUX PROTEIN - - 4 468 5.4E-113
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 65 255 7.3E-26
NCBIfam TIGR01845 JCVI: efflux transporter outer membrane subunit IPR010131 RND efflux system, outer membrane lipoprotein, NodT 10 464 0.0
Coils Coil Coil - - 290 310 -
SUPERFAMILY SSF56954 Outer membrane efflux proteins (OEP) - - 3 466 3.14E-118

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.