Pseudomonas fluorescens F113, PSF113_2596
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00180
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0009231 | riboflavin biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00180
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | flavin biosynthesis III (fungi) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | flavin biosynthesis II (archaea) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | toxoflavin biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfe01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfe00740 | Riboflavin metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00926 | 3,4-dihydroxy-2-butanone 4-phosphate synthase | IPR000422 | 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB | 7 | 198 | 8.3E-77 |
| SUPERFAMILY | SSF55821 | YrdC/RibB | IPR017945 | DHBP synthase RibB-like alpha/beta domain superfamily | 2 | 202 | 1.65E-82 |
| NCBIfam | TIGR00506 | JCVI: 3,4-dihydroxy-2-butanone-4-phosphate synthase | IPR000422 | 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB | 3 | 199 | 1.4E-68 |
| Hamap | MF_00180 | 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. | IPR000422 | 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB | 1 | 203 | 36.963512 |
| Gene3D | G3DSA:3.40.50.10990 | GTP cyclohydrolase II | IPR036144 | GTP cyclohydrolase II superfamily | 206 | 368 | 3.5E-26 |
| SUPERFAMILY | SSF142695 | RibA-like | IPR036144 | GTP cyclohydrolase II superfamily | 204 | 367 | 6.15E-41 |
| Pfam | PF00925 | GTP cyclohydrolase II | IPR032677 | GTP cyclohydrolase II | 211 | 366 | 5.3E-29 |
| FunFam | G3DSA:3.90.870.10:FF:000001 | Riboflavin biosynthesis protein RibBA | - | - | 1 | 205 | 1.4E-91 |
| PIRSF | PIRSF001259 | RibA | - | - | 1 | 369 | 1.4E-111 |
| PANTHER | PTHR21327 | GTP CYCLOHYDROLASE II-RELATED | - | - | 1 | 298 | 1.4E-89 |
| Gene3D | G3DSA:3.90.870.10 | DHBP synthase | - | - | 1 | 205 | 5.0E-83 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.