Pseudomonas fluorescens F113, PSF113_2780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0019867 | outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01414
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF51126 | Pectin lyase-like | IPR011050 | Pectin lyase fold/virulence factor | 39 | 464 | 1.1E-37 |
| Pfam | PF03797 | Autotransporter beta-domain | IPR005546 | Autotransporter beta-domain | 537 | 783 | 8.7E-46 |
| Pfam | PF18883 | Autochaperone Domain Type 1 | IPR043990 | Autochaperone domain type 1 | 334 | 446 | 2.8E-30 |
| SMART | SM00869 | Autotransporter_2 | IPR005546 | Autotransporter beta-domain | 533 | 794 | 1.3E-39 |
| SUPERFAMILY | SSF103515 | Autotransporter | IPR036709 | Autotransporter beta-domain superfamily | 503 | 807 | 2.09E-42 |
| CDD | cd01344 | PL2_Passenger_AT | IPR043990 | Autochaperone domain type 1 | 296 | 465 | 5.6172E-47 |
| Gene3D | G3DSA:2.160.20.20 | - | IPR012332 | Autotransporter, pectate lyase C-like domain superfamily | 27 | 464 | 6.7E-37 |
| PANTHER | PTHR35037 | C-TERMINAL REGION OF AIDA-LIKE PROTEIN | - | - | 49 | 807 | 1.2E-24 |
| Gene3D | G3DSA:2.40.128.130 | - | IPR036709 | Autotransporter beta-domain superfamily | 491 | 807 | 5.2E-76 |
| NCBIfam | TIGR01414 | JCVI: outer membrane autotransporter barrel domain | IPR006315 | Outer membrane autotransporter barrel domain | 352 | 807 | 1.6E-75 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.