Pseudomonas fluorescens F113, PSF113_3987 (foaB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0005737 | cytoplasm |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02445
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003988 | acetyl-CoA C-acyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02445
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006631 | fatty acid metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02445
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0016042 | lipid catabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02445
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
Inferred from Sequence Model
Term mapped from: InterPro:PF02803
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016746 | transferase activity, transferring acyl groups |
Inferred from Sequence Model
Term mapped from: InterPro:SSF53901
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pfe01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | sitosterol degradation to androstenedione | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | fatty acid salvage | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe00071 | Fatty acid degradation | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | androstenedione degradation | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe00362 | Benzoate degradation | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | pyruvate fermentation to hexanol (engineered) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | jasmonic acid biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 4-hydroxybenzoate biosynthesis III (plants) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | fatty acid β-oxidation II (peroxisome) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 4-ethylphenol degradation (anaerobic) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | cholesterol degradation to androstenedione II (cholesterol dehydrogenase) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | cholesterol degradation to androstenedione I (cholesterol oxidase) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | fatty acid β-oxidation (peroxisome, yeast) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | 10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe01212 | Fatty acid metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfe00280 | Valine, leucine and isoleucine degradation | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | (8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe00592 | alpha-Linolenic acid metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | 10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfe00281 | Geraniol degradation | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | fermentation to 2-methylbutanoate | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 4-oxopentanoate degradation | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | docosahexaenoate biosynthesis III (6-desaturase, mammals) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.47.10 | - | IPR016039 | Thiolase-like | 130 | 377 | 0.0 |
| CDD | cd00751 | thiolase | IPR002155 | Thiolase | 2 | 382 | 0.0 |
| NCBIfam | TIGR01930 | JCVI: acetyl-CoA C-acyltransferase | IPR002155 | Thiolase | 2 | 381 | 0.0 |
| PIRSF | PIRSF000429 | Ac-CoA_Ac_transf | IPR002155 | Thiolase | 1 | 383 | 0.0 |
| FunFam | G3DSA:3.40.47.10:FF:000010 | Acetyl-CoA acetyltransferase (Thiolase) | - | - | 1 | 382 | 0.0 |
| SUPERFAMILY | SSF53901 | Thiolase-like | IPR016039 | Thiolase-like | 2 | 254 | 1.65E-77 |
| Gene3D | G3DSA:3.40.47.10 | - | IPR016039 | Thiolase-like | 1 | 263 | 0.0 |
| PANTHER | PTHR43853 | 3-KETOACYL-COA THIOLASE, PEROXISOMAL | - | - | 2 | 383 | 3.3E-127 |
| Pfam | PF00108 | Thiolase, N-terminal domain | IPR020616 | Thiolase, N-terminal | 1 | 249 | 2.5E-84 |
| SUPERFAMILY | SSF53901 | Thiolase-like | IPR016039 | Thiolase-like | 258 | 382 | 1.52E-43 |
| NCBIfam | TIGR02445 | JCVI: acetyl-CoA C-acyltransferase FadA | IPR012805 | Acetyl-CoA C-acyltransferase FadA | 2 | 383 | 0.0 |
| Pfam | PF02803 | Thiolase, C-terminal domain | IPR020617 | Thiolase, C-terminal | 258 | 382 | 1.9E-49 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.