Pseudomonas fluorescens F113, PSF113_5096

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0046565 3-dehydroshikimate dehydratase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02238
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0046279 3,4-dihydroxybenzoate biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02238
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe00350 Tyrosine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe00360 Phenylalanine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe00130 Ubiquinone and other terpenoid-quinone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.20.20.150 - - - 1 269 6.9E-70
SUPERFAMILY SSF51658 Xylose isomerase-like IPR036237 Xylose isomerase-like superfamily 1 268 1.52E-76
SUPERFAMILY SSF54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 289 619 1.54E-64
Gene3D G3DSA:3.10.180.10 - IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 435 628 3.2E-47
CDD cd08342 HPPD_N_like IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal 297 425 3.54007E-28
Hamap MF_02238 3-dehydroshikimate dehydratase. IPR043700 3-dehydroshikimate dehydratase 1 625 46.100193
Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain 438 579 2.0E-11
Pfam PF01261 Xylose isomerase-like TIM barrel IPR013022 Xylose isomerase-like, TIM barrel domain 18 262 6.4E-43
PANTHER PTHR12110 HYDROXYPYRUVATE ISOMERASE - - 1 336 8.0E-96
Gene3D G3DSA:3.10.180.10 - IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 290 431 9.7E-41
CDD cd07250 HPPD_C_like IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal 436 622 7.43884E-66
Coils Coil Coil - - 64 91 -
Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal - - 294 425 7.3E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.