Pseudomonas fluorescens F113, PSF113_5372

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00091 pas_2 IPR000014 PAS domain 670 739 2.9E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 535 660 3.7E-18
Gene3D G3DSA:3.30.450.20 PAS domain - - 308 414 9.8E-19
SMART SM00091 pas_2 IPR000014 PAS domain 299 367 0.01
Gene3D G3DSA:3.30.450.20 PAS domain - - 665 795 1.5E-35
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 966 1227 1.3E-100
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 796 964 1.1E-59
Gene3D G3DSA:3.40.190.10 - - - 110 204 7.7E-73
SMART SM00086 pac_2 IPR001610 PAC motif 373 413 0.042
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 674 791 3.2E-19
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 534 660 8.86E-19
Pfam PF13426 PAS domain IPR000014 PAS domain 681 782 4.2E-13
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 654 1217 0.0
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 800 956 1.65E-50
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 26 243 6.64E-54
SMART SM00091 pas_2 IPR000014 PAS domain 549 616 0.81
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 795 952 7.5E-51
CDD cd01949 GGDEF IPR000160 GGDEF domain 796 953 2.96464E-65
CDD cd01948 EAL IPR001633 EAL domain 972 1212 8.35323E-110
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 791 954 2.2E-41
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 25 245 1.2E-39
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 675 782 6.77E-27
CDD cd00130 PAS IPR000014 PAS domain 319 410 7.46224E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 559 661 2.3E-6
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 26 243 3.6E-42
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 971 1221 1.7E-89
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 967 1221 2.3E-92
Gene3D G3DSA:3.40.190.10 - - - 15 241 7.7E-73
CDD cd00130 PAS IPR000014 PAS domain 436 534 6.01248E-8
SMART SM00091 pas_2 IPR000014 PAS domain 425 492 7.8E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 546 669 9.5E-13
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 790 957 6.7E-42
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 423 544 1.1E-12
Pfam PF08447 PAS fold IPR013655 PAS fold-3 324 400 4.3E-9
SMART SM00086 pac_2 IPR001610 PAC motif 622 662 5.8E-4
SMART SM00086 pac_2 IPR001610 PAC motif 497 537 0.26
SMART SM00052 duf2_2 IPR001633 EAL domain 966 1212 5.1E-107
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 410 535 1.55E-19
SMART SM00267 duf1_3 IPR000160 GGDEF domain 784 956 9.2E-69
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 295 420 1.7E-10
CDD cd00130 PAS IPR000014 PAS domain 558 659 3.0574E-4
SMART SM00086 pac_2 IPR001610 PAC motif 742 784 2.1E-7
Pfam PF13426 PAS domain IPR000014 PAS domain 443 536 1.5E-5
Pfam PF00563 EAL domain IPR001633 EAL domain 973 1207 2.0E-72
Gene3D G3DSA:3.30.450.20 PAS domain - - 415 534 3.7E-21
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 284 411 9.34E-16
CDD cd00130 PAS IPR000014 PAS domain 679 781 7.64353E-11
CDD cd01007 PBP2_BvgS_HisK_like - - 23 242 2.42601E-83

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.