Pseudomonas fluorescens F113, PSF113_5372

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00052 duf2_2 IPR001633 EAL domain 966 1212 5.1E-107
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 423 544 1.1E-12
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 26 243 6.64E-54
Gene3D G3DSA:3.40.190.10 - - - 110 204 7.7E-73
Gene3D G3DSA:3.40.190.10 - - - 15 241 7.7E-73
CDD cd00130 PAS IPR000014 PAS domain 319 410 7.46224E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 308 414 9.8E-19
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 966 1227 1.3E-100
SMART SM00086 pac_2 IPR001610 PAC motif 622 662 5.8E-4
Pfam PF08447 PAS fold IPR013655 PAS fold-3 324 400 4.3E-9
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 971 1221 1.7E-89
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 25 245 1.2E-39
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 800 956 1.65E-50
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 410 535 1.55E-19
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 796 964 1.1E-59
SMART SM00091 pas_2 IPR000014 PAS domain 299 367 0.01
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 284 411 9.34E-16
SMART SM00091 pas_2 IPR000014 PAS domain 549 616 0.81
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 295 420 1.7E-10
SMART SM00086 pac_2 IPR001610 PAC motif 373 413 0.042
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 26 243 3.6E-42
SMART SM00086 pac_2 IPR001610 PAC motif 497 537 0.26
Pfam PF13426 PAS domain IPR000014 PAS domain 681 782 4.2E-13
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 654 1217 0.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 674 791 3.2E-19
CDD cd00130 PAS IPR000014 PAS domain 679 781 7.64353E-11
Gene3D G3DSA:3.30.450.20 PAS domain - - 415 534 3.7E-21
CDD cd01948 EAL IPR001633 EAL domain 972 1212 8.35323E-110
CDD cd01949 GGDEF IPR000160 GGDEF domain 796 953 2.96464E-65
CDD cd00130 PAS IPR000014 PAS domain 558 659 3.0574E-4
CDD cd00130 PAS IPR000014 PAS domain 436 534 6.01248E-8
Pfam PF00563 EAL domain IPR001633 EAL domain 973 1207 2.0E-72
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 967 1221 2.3E-92
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 675 782 6.77E-27
SMART SM00267 duf1_3 IPR000160 GGDEF domain 784 956 9.2E-69
SMART SM00086 pac_2 IPR001610 PAC motif 742 784 2.1E-7
SMART SM00091 pas_2 IPR000014 PAS domain 425 492 7.8E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 665 795 1.5E-35
Pfam PF13426 PAS domain IPR000014 PAS domain 559 661 2.3E-6
SMART SM00091 pas_2 IPR000014 PAS domain 670 739 2.9E-6
Pfam PF13426 PAS domain IPR000014 PAS domain 443 536 1.5E-5
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 795 952 7.5E-51
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 534 660 8.86E-19
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 790 957 6.7E-42
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 791 954 2.2E-41
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 546 669 9.5E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 535 660 3.7E-18
CDD cd01007 PBP2_BvgS_HisK_like - - 23 242 2.42601E-83

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.