Pseudomonas fluorescens F113, PSF113_5782 (sadB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0002161 | aminoacyl-tRNA editing activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF04073
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF04073 | Aminoacyl-tRNA editing domain | IPR007214 | YbaK/aminoacyl-tRNA synthetase-associated domain | 7 | 116 | 8.0E-13 |
| SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | - | - | 156 | 427 | 8.47E-62 |
| CDD | cd04332 | YbaK_like | - | - | 6 | 126 | 5.79601E-14 |
| PANTHER | PTHR33525 | - | - | - | 13 | 441 | 6.7E-116 |
| PANTHER | PTHR33525:SF6 | HDOD DOMAIN PROTEIN | - | - | 13 | 441 | 6.7E-116 |
| Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | - | - | 132 | 439 | 3.7E-86 |
| SUPERFAMILY | SSF55826 | YbaK/ProRS associated domain | IPR036754 | YbaK/aminoacyl-tRNA synthetase-associated domain superfamily | 6 | 120 | 1.31E-11 |
| Gene3D | G3DSA:3.90.960.10 | - | IPR036754 | YbaK/aminoacyl-tRNA synthetase-associated domain superfamily | 5 | 129 | 2.5E-25 |
| PIRSF | PIRSF036888 | HDGYPm_UCP036888 | IPR014627 | Uncharacterised conserved protein UCP036888, signal transduction HD-GYP-like, PA5346 type | 1 | 442 | 0.0 |
| Pfam | PF08668 | HDOD domain | IPR013976 | Metal-dependent hydrolase HDOD | 171 | 371 | 8.8E-46 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.