Pseudomonas fluorescens F113, PSF113_5795 (vasD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 5.0
Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 IPR017734 Type VI secretion system, lipoprotein SciN 36 151 1.1E-35
TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family IPR017734 Type VI secretion system, lipoprotein SciN 4 155 5.2E-44
Gene3D G3DSA:2.60.40.4150 IPR038706 Type VI secretion protein SciN-like superfamily 34 161 3.5E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.