Pseudomonas fluorescens F113, PSF113_5811
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.60.200.60 | - | - | - | 91 | 230 | 1.4E-13 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1282 | 1302 | 8.1E-13 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 951 | 1337 | 1.2E-74 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 297 | 376 | 8.7E-21 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 890 | 922 | 8.0E-6 |
| Pfam | PF14414 | A nuclease of the HNH/ENDO VII superfamily with conserved WHH | IPR032869 | WHH domain-containing protein | 1403 | 1449 | 8.1E-15 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 787 | 950 | 4.4E-24 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 667 | 698 | 7.6E-6 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1259 | 1337 | 2.7E-24 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1231 | 1267 | 7.8E-13 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1305 | 1324 | 8.1E-13 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 672 | 703 | 2.0E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 599 | 639 | 1.2E-8 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1121 | 1144 | 0.0026 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1225 | 1245 | 8.1E-13 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 747 | 784 | 1.1E-6 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 465 | 735 | 6.0E-39 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1145 | 1176 | 2.0E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 789 | 818 | 4.6E-4 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 578 | 614 | 3.6E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 790 | 825 | 1.6E-8 |
| PANTHER | PTHR32305 | - | - | - | 481 | 639 | 9.9E-37 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 769 | 808 | 2.2E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 705 | 741 | 8.3E-9 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 732 | 766 | 9.1E-7 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 890 | 919 | 2.7E-5 |
| CDD | cd14742 | PAAR_RHS | - | - | 100 | 230 | 3.32286E-24 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 705 | 745 | 1.5E-7 |
| Pfam | PF05488 | PAAR motif | IPR008727 | PAAR motif | 174 | 219 | 2.0E-8 |
| SUPERFAMILY | SSF69304 | Tricorn protease N-terminal domain | - | - | 668 | 988 | 3.34E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 747 | 787 | 5.2E-8 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 604 | 635 | 2.5E-7 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 810 | 850 | 8.6E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 651 | 682 | 2.3E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 489 | 525 | 1.1E-4 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.