Pseudomonas fluorescens F113, PSF113_5886 (gmd)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008446 GDP-mannose 4,6-dehydratase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00955
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019673 GDP-mannose metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00955
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc GDP-L-colitose biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc GDP-mycosamine biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc GDP-6-deoxy-D-talose biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc GDP-L-fucose biosynthesis I (from GDP-D-mannose) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfe01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe00520 Amino sugar and nucleotide sugar metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe00051 Fructose and mannose metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc GDP-D-perosamine biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. IPR006368 GDP-mannose 4,6-dehydratase 2 321 52.521858
Gene3D G3DSA:3.40.50.720 - - - 5 301 0.0
PANTHER PTHR43715 GDP-MANNOSE 4,6-DEHYDRATASE IPR006368 GDP-mannose 4,6-dehydratase 2 320 2.1E-120
NCBIfam TIGR01472 JCVI: GDP-mannose 4,6-dehydratase IPR006368 GDP-mannose 4,6-dehydratase 2 318 9.9E-127
FunFam G3DSA:3.40.50.720:FF:000924 GDP-mannose 4,6 dehydratase - - 1 193 1.9E-60
Gene3D G3DSA:3.90.25.10 - - - 185 311 0.0
Pfam PF16363 GDP-mannose 4,6 dehydratase IPR016040 NAD(P)-binding domain 5 311 3.7E-121
CDD cd05260 GDP_MD_SDR_e - - 4 317 0.0
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 2 317 9.13E-73

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.