Pseudomonas fluorescens SBW25, PFLU0035 (trpA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0004834 | tryptophan synthase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00290
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006568 | tryptophan metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF00290
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| UniPathway | UPA00035 | L-tryptophan biosynthesis | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00260 | Glycine, serine and threonine metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF51366 | Ribulose-phoshate binding barrel | IPR011060 | Ribulose-phosphate binding barrel | 1 | 247 | 2.07E-91 |
| FunFam | G3DSA:3.20.20.70:FF:000037 | Tryptophan synthase alpha chain | - | - | 1 | 266 | 8.0E-97 |
| NCBIfam | TIGR00262 | JCVI: tryptophan synthase subunit alpha | IPR002028 | Tryptophan synthase, alpha chain | 8 | 252 | 3.2E-78 |
| Pfam | PF00290 | Tryptophan synthase alpha chain | IPR002028 | Tryptophan synthase, alpha chain | 8 | 259 | 2.8E-99 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | IPR013785 | Aldolase-type TIM barrel | 1 | 268 | 9.7E-102 |
| CDD | cd04724 | Tryptophan_synthase_alpha | IPR002028 | Tryptophan synthase, alpha chain | 18 | 260 | 1.39017E-118 |
| PANTHER | PTHR43406 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN | IPR002028 | Tryptophan synthase, alpha chain | 3 | 262 | 3.3E-82 |
| Hamap | MF_00131 | Tryptophan synthase alpha chain [trpA]. | IPR002028 | Tryptophan synthase, alpha chain | 14 | 263 | 36.453045 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.