Pseudomonas fluorescens SBW25, PFLU0453
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.55.50.10 | - | - | - | 95 | 188 | 3.1E-88 |
| SUPERFAMILY | SSF69349 | Phage fibre proteins | - | - | 445 | 601 | 1.57E-28 |
| Gene3D | G3DSA:4.10.220.110 | - | - | - | 221 | 280 | 3.1E-88 |
| Gene3D | G3DSA:2.40.50.230 | - | IPR037026 | Vgr protein, OB-fold domain superfamily | 355 | 457 | 7.9E-37 |
| NCBIfam | TIGR01646 | JCVI: type VI secretion system tip protein VgrG | IPR006533 | Type VI secretion system, RhsGE-associated Vgr protein | 22 | 505 | 2.5E-116 |
| PANTHER | PTHR32305 | - | - | - | 63 | 596 | 7.4E-70 |
| NCBIfam | TIGR03361 | JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain | IPR017847 | Type VI secretion system, RhsGE-associated Vgr family subset | 10 | 522 | 0.0 |
| SUPERFAMILY | SSF69279 | Phage tail proteins | - | - | 189 | 360 | 2.72E-42 |
| Pfam | PF05954 | Phage tail baseplate hub (GPD) | - | - | 29 | 323 | 1.0E-75 |
| SUPERFAMILY | SSF69279 | Phage tail proteins | - | - | 10 | 184 | 5.1E-56 |
| Pfam | PF04717 | Type VI secretion system/phage-baseplate injector OB domain | IPR006531 | Gp5/Type VI secretion system Vgr protein, OB-fold domain | 387 | 453 | 5.5E-13 |
| SUPERFAMILY | SSF69255 | gp5 N-terminal domain-like | - | - | 365 | 453 | 4.71E-31 |
| Gene3D | G3DSA:2.30.110.50 | - | - | - | 22 | 325 | 3.1E-88 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.