Pseudomonas fluorescens SBW25, PFLU0458

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00065 IPR003018 GAF domain 192 338 9.8E-5
Gene3D G3DSA:3.30.450.20 340 464 4.5E-25
Pfam PF13426 PAS domain IPR000014 PAS domain 352 454 1.3E-13
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 635 889 79.849
SUPERFAMILY SSF55781 193 330 3.27E-20
Pfam PF00563 EAL domain IPR001633 EAL domain 640 875 3.1E-74
CDD cd00130 PAS IPR000014 PAS domain 350 452 3.11511E-8
SMART SM00267 IPR000160 GGDEF domain 455 624 4.4E-53
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 412 464 12.235
SMART SM00091 IPR000014 PAS domain 23 86 44.0
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 342 461 5.7E-14
SMART SM00052 IPR001633 EAL domain 634 880 8.0E-113
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 639 888 1.83E-90
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 153 339 2.0E-18
Coils Coil 144 164 -
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 637 887 1.5E-100
Pfam PF01590 GAF domain IPR003018 GAF domain 193 328 3.2E-12
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 347 453 7.89E-19
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 339 383 10.264
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 471 625 9.42E-42
SMART SM00086 IPR001610 PAC motif 413 455 7.7E-4
SMART SM00091 IPR000014 PAS domain 341 408 1.9E-5
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 462 623 3.7E-34
Gene3D G3DSA:3.30.70.270 465 636 1.5E-49
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 466 619 8.1E-39
CDD cd01949 GGDEF IPR000160 GGDEF domain 467 622 1.47731E-53
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 494 626 30.573
CDD cd00130 PAS IPR000014 PAS domain 40 102 0.00241039
CDD cd01948 EAL IPR001633 EAL domain 640 880 2.817E-99

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.