Pseudomonas fluorescens SBW25, PFLU1298 (truD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01142
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01142
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01142
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01142
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01142 tRNA pseudouridine synthase D (TruD) IPR001656 Pseudouridine synthase, TruD 20 170 3.2E-39
Pfam PF01142 tRNA pseudouridine synthase D (TruD) IPR001656 Pseudouridine synthase, TruD 193 337 6.0E-15
Hamap MF_01082 tRNA pseudouridine synthase D [truD]. IPR001656 Pseudouridine synthase, TruD 6 342 27.678741
PANTHER PTHR47811 TRNA PSEUDOURIDINE SYNTHASE D - - 1 346 4.9E-125
Gene3D G3DSA:3.30.2350.20 TruD, catalytic domain IPR042214 Pseudouridine synthase, TruD, catalytic domain 18 337 4.0E-109
CDD cd02575 PseudoU_synth_EcTruD - - 19 338 8.59469E-116
Gene3D G3DSA:3.30.2340.10 TruD, insertion domain IPR043165 Pseudouridine synthase, TruD, insertion domain superfamily 169 301 4.0E-109
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 10 339 9.06E-92

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.