Pseudomonas fluorescens SBW25, PFLU1696 (greB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0070063 RNA polymerase binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00105
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01461
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0032784 regulation of DNA-templated transcription, elongation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01461
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.287.180 - IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily 1 76 1.8E-23
Hamap MF_00930 Transcription elongation factor GreB [greB]. IPR006358 Transcription elongation factor GreB 1 156 50.017639
FunFam G3DSA:1.10.287.180:FF:000001 Transcription elongation factor GreA - - 1 76 4.6E-27
FunFam G3DSA:3.10.50.30:FF:000001 Transcription elongation factor GreA - - 80 156 3.0E-28
NCBIfam TIGR01461 JCVI: transcription elongation factor GreB IPR006358 Transcription elongation factor GreB 3 157 9.1E-75
SUPERFAMILY SSF46557 GreA transcript cleavage protein, N-terminal domain IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily 4 77 1.57E-24
PANTHER PTHR30437 TRANSCRIPTION ELONGATION FACTOR GREA IPR023459 Transcription elongation factor GreA/GreB family 3 156 4.9E-39
PIRSF PIRSF006092 GreA_GreB IPR023459 Transcription elongation factor GreA/GreB family 1 157 1.7E-43
Gene3D G3DSA:3.10.50.30 - IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily 77 157 6.2E-23
Hamap MF_00105 Transcription elongation factor GreA [greA]. IPR028624 Transcription elongation factor GreA/GreB 2 154 24.304693
Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term IPR001437 Transcription elongation factor, GreA/GreB, C-terminal 81 155 1.5E-20
SUPERFAMILY SSF54534 FKBP-like - - 80 155 3.53E-20
Pfam PF03449 Transcription elongation factor, N-terminal IPR022691 Transcription elongation factor, GreA/GreB, N-terminal 5 74 1.1E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.