Pseudomonas fluorescens SBW25, PFLU2912

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02735	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006303	double-strand break repair via nonhomologous end joining	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02735	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:2.40.290.10	-	IPR016194	SPOC-like, C-terminal domain superfamily	3	180	1.4E-18
PIRSF	PIRSF006493	Prok_Ku	IPR009187	Non-homologous end joining protein Ku, prokaryotic type	1	277	6.0E-93
SUPERFAMILY	SSF100939	SPOC domain-like	IPR016194	SPOC-like, C-terminal domain superfamily	1	267	3.34E-52
Pfam	PF02735	Ku70/Ku80 beta-barrel domain	IPR006164	Ku70/Ku80 beta-barrel domain	12	193	1.1E-33
SMART	SM00559	ku_4	IPR006164	Ku70/Ku80 beta-barrel domain	53	181	1.2E-40
FunFam	G3DSA:2.40.290.10:FF:000004	Non-homologous end joining protein Ku	-	-	4	177	1.7E-60
CDD	cd00789	KU_like	IPR009187	Non-homologous end joining protein Ku, prokaryotic type	3	260	9.4058E-123
PANTHER	PTHR41251	NON-HOMOLOGOUS END JOINING PROTEIN KU	IPR009187	Non-homologous end joining protein Ku, prokaryotic type	1	274	4.6E-95
Hamap	MF_01875	Non-homologous end joining protein Ku [ku].	IPR009187	Non-homologous end joining protein Ku, prokaryotic type	2	261	30.48996
NCBIfam	TIGR02772	JCVI: Ku protein	IPR009187	Non-homologous end joining protein Ku, prokaryotic type	3	261	2.8E-96

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.