Pseudomonas fluorescens SBW25, PFLU4288
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00440
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 3 | 86 | 5.64E-14 |
| Pfam | PF00440 | Bacterial regulatory proteins, tetR family | IPR001647 | DNA-binding HTH domain, TetR-type | 17 | 63 | 1.9E-10 |
| Gene3D | G3DSA:1.10.10.60 | - | - | - | 1 | 70 | 1.3E-26 |
| Gene3D | G3DSA:1.10.357.10 | Tetracycline Repressor, domain 2 | - | - | 71 | 202 | 3.5E-25 |
| PANTHER | PTHR47506 | TRANSCRIPTIONAL REGULATORY PROTEIN | - | - | 4 | 199 | 3.0E-41 |
| SUPERFAMILY | SSF48498 | Tetracyclin repressor-like, C-terminal domain | IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily | 84 | 199 | 1.34E-20 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.