Pseudomonas fluorescens SBW25, PFLU5591 (dnaG)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.90.580.10	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016779	nucleotidyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF10410	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.90.580.10	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006269	DNA replication, synthesis of RNA primer	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00766	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003896	DNA primase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00766	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.90.580.10	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG (InterPro)	00520	Amino sugar and nucleotide sugar metabolism	InterPro 5.8-49.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion	0

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF117023	DNA primase DnaG, C-terminal domain	-	-	513	639	1.16E-31
Pfam	PF08278	DNA primase DnaG DnaB-binding	IPR013173	DNA primase DnaG, DnaB-binding domain	517	633	1.8E-23
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	466	505	-
Gene3D	G3DSA:1.20.50.20	DnaG, RNA polymerase domain, helical bundle	-	-	371	427	7.0E-20
Hamap	MF_00974	DNA primase [dnaG].	IPR030846	DNA primase DnaG, bacteria	4	643	29.859627
Gene3D	G3DSA:3.90.980.10	-	IPR037068	DNA primase, catalytic core, N-terminal domain superfamily	113	242	2.1E-49
PIRSF	PIRSF002811	DnaG	IPR030846	DNA primase DnaG, bacteria	2	649	0.0
Gene3D	G3DSA:3.90.580.10	-	IPR036977	DNA Primase, CHC2-type zinc finger	2	102	2.2E-36
SUPERFAMILY	SSF57783	Zinc beta-ribbon	-	-	4	101	4.25E-38
FunFam	G3DSA:3.40.1360.10:FF:000002	DNA primase	-	-	243	370	2.9E-52
SMART	SM00493	toprim5	IPR006171	TOPRIM domain	261	332	1.0E-19
NCBIfam	TIGR01391	JCVI: DNA primase	IPR006295	DNA primase, DnaG	5	419	0.0
SUPERFAMILY	SSF56731	DNA primase core	-	-	116	427	7.06E-109
Gene3D	G3DSA:3.40.1360.10	-	-	-	243	370	1.0E-40
Pfam	PF10410	DnaB-helicase binding domain of primase	IPR019475	DNA primase, DnaB-helicase binding domain	373	425	1.4E-8
Gene3D	G3DSA:1.10.860.10	DNAb Helicase; Chain A	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	504	651	5.3E-34
PANTHER	PTHR30313	DNA PRIMASE	-	-	1	647	0.0
Pfam	PF13662	Toprim domain	IPR006171	TOPRIM domain	261	327	2.3E-16
FunFam	G3DSA:3.90.980.10:FF:000001	DNA primase	-	-	110	242	1.1E-49
SMART	SM00766	dnag_dnab_bind_seq8d	IPR013173	DNA primase DnaG, DnaB-binding domain	513	642	2.6E-30
SMART	SM00400	primzinc3	IPR002694	Zinc finger, CHC2-type	36	90	1.7E-33
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	479	501	-
Pfam	PF08275	DNA primase catalytic core, N-terminal domain	IPR013264	DNA primase, catalytic core, N-terminal	126	253	7.0E-44
CDD	cd03364	TOPRIM_DnaG_primases	IPR034151	Bacterial DnaG primase, TOPRIM domain	261	342	2.30695E-34
FunFam	G3DSA:3.90.580.10:FF:000001	DNA primase	-	-	1	101	2.7E-42
Pfam	PF01807	CHC2 zinc finger	IPR002694	Zinc finger, CHC2-type	6	100	2.3E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.