Pseudomonas fluorescens SBW25, PFLU5724 (rhlE1)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003724	RNA helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0042255	ribosome assembly	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd00268	DEADc	-	-	12	213	2.06089E-100
SMART	SM00487	ultradead3	IPR014001	Helicase superfamily 1/2, ATP-binding domain	20	227	2.5E-60
FunFam	G3DSA:3.40.50.300:FF:000108	ATP-dependent RNA helicase RhlE	-	-	1	215	1.7E-91
FunFam	G3DSA:3.40.50.300:FF:000468	ATP-dependent RNA helicase RhlE	-	-	218	399	2.9E-93
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	218	397	2.4E-49
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	385	628	-
Hamap	MF_00968	ATP-dependent RNA helicase RhlE [rhlE].	IPR028622	ATP-dependent RNA helicase RhlE	1	550	48.734886
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	420	455	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	553	575	-
PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	-	-	2	520	0.0
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	1	215	7.4E-77
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	79	365	2.37E-70
Pfam	PF00270	DEAD/DEAH box helicase	IPR011545	DEAD/DEAH box helicase domain	25	199	3.0E-45
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	239	344	2.3E-26
CDD	cd18787	SF2_C_DEAD	-	-	224	353	3.83082E-59
SMART	SM00490	helicmild6	IPR001650	Helicase, C-terminal	263	344	8.7E-31
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	524	543	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	24	105	1.59E-6
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	471	485	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	386	404	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.