Pseudomonas fluorescens SBW25, PFLU6004

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0002161 aminoacyl-tRNA editing activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04073
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG (InterPro) 00970 Aminoacyl-tRNA biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
0

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04073 Aminoacyl-tRNA editing domain IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain 29 140 2.9E-14
SUPERFAMILY SSF109604 HD-domain/PDEase-like - - 179 450 1.05E-62
SUPERFAMILY SSF55826 YbaK/ProRS associated domain IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily 24 143 2.62E-12
PIRSF PIRSF036888 HDGYPm_UCP036888 IPR014627 Uncharacterised conserved protein UCP036888, signal transduction HD-GYP-like, PA5346 type 1 465 0.0
Gene3D G3DSA:3.90.960.10 - IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily 11 152 7.8E-27
PANTHER PTHR33525 - - - 170 452 2.8E-52
Pfam PF08668 HDOD domain IPR013976 Metal-dependent hydrolase HDOD 194 394 1.3E-46
Gene3D G3DSA:1.10.3210.10 Hypothetical protein af1432 - - 156 463 8.8E-88

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.