Pseudomonas fluorescens SBW25, PFLU6074

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 550 708 5.57E-43
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 278 970 0.0
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 721 969 7.98E-92
SMART SM00091 pas_2 IPR000014 PAS domain 420 486 4.1E-6
SMART SM00267 duf1_3 IPR000160 GGDEF domain 534 706 2.9E-52
Pfam PF08447 PAS fold IPR013655 PAS fold-3 322 405 3.2E-19
Gene3D G3DSA:3.30.450.20 PAS domain - - 415 551 3.7E-29
SMART SM00091 pas_2 IPR000014 PAS domain 295 362 25.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 417 540 2.1E-15
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 544 703 9.3E-31
Gene3D G3DSA:3.30.450.20 PAS domain - - 288 408 3.1E-32
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 303 413 7.85E-16
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 321 418 2.3E-7
Coils Coil Coil - - 230 268 -
CDD cd00130 PAS IPR000014 PAS domain 429 531 1.82598E-8
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 717 972 8.2E-95
SMART SM00052 duf2_2 IPR001633 EAL domain 716 962 2.1E-121
Pfam PF08448 PAS fold IPR013656 PAS fold-4 426 536 9.5E-13
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 552 715 1.8E-48
Pfam PF00563 EAL domain IPR001633 EAL domain 722 957 6.2E-74
CDD cd01949 GGDEF IPR000160 GGDEF domain 546 704 9.54808E-52
CDD cd00130 PAS IPR000014 PAS domain 307 409 3.02547E-6
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 716 973 9.3E-104
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 545 701 1.5E-41
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 425 532 1.47E-23
CDD cd01948 EAL IPR001633 EAL domain 722 961 3.37707E-113
Coils Coil Coil - - 710 730 -
SMART SM00086 pac_2 IPR001610 PAC motif 369 412 5.0E-8
SMART SM00086 pac_2 IPR001610 PAC motif 492 534 0.0055

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.