Pseudomonas putida GB-1, PputGB1_0147

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 483 587 4.8E-24
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 369 436 5.5E-13
CDD cd06225 HAMP - - 192 235 3.13401E-8
FunFam G3DSA:3.30.565.10:FF:000006 Sensor histidine kinase WalK - - 441 588 1.4E-38
SMART SM00091 pas_2 IPR000014 PAS domain 251 317 1.8E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 239 360 5.7E-20
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 574 587 4.5E-19
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 353 436 2.55E-17
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 425 588 1.96E-46
SUPERFAMILY SSF158472 HAMP domain-like - - 188 237 1.09E-7
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 368 436 1.9E-16
SMART SM00304 HAMP_11 IPR003660 HAMP domain 188 240 1.1E-10
CDD cd00130 PAS IPR000014 PAS domain 260 359 1.91109E-5
CDD cd00075 HATPase - - 487 586 2.20725E-34
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 537 547 4.5E-19
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 519 533 4.5E-19
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 440 588 1.1E-45
Gene3D G3DSA:1.10.287.130 - - - 361 434 6.0E-17
Gene3D G3DSA:1.20.120.880 Histidine kinase (KinB), sensor domain IPR038320 KinB, N-terminal domain superfamily 34 161 1.5E-35
Gene3D G3DSA:1.10.8.500 HAMP domain in histidine kinase - - 187 238 2.5E-7
PANTHER PTHR44936 SENSOR PROTEIN CREC - - 1 587 2.9E-85
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 550 568 4.5E-19
Pfam PF16767 Sensor domain of alginate biosynthesis sensor protein KinB IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain 36 150 5.1E-36
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 244 360 1.03E-14
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 250 366 6.0E-9
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 366 432 8.89711E-13
Pfam PF00672 HAMP domain IPR003660 HAMP domain 186 236 1.3E-9
Pfam PF08448 PAS fold IPR013656 PAS fold-4 257 363 1.1E-13
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 482 588 2.2E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.