Pseudomonas putida GB-1, PputGB1_0361

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00512
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00304 HAMP_11 IPR003660 HAMP domain 204 255 7.1E-6
CDD cd06225 HAMP - - 208 250 1.10507E-4
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 311 474 7.07E-31
CDD cd18773 PDC1_HK_sensor - - 40 167 1.98508E-5
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 255 321 1.0E-16
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 258 319 8.9E-13
Gene3D G3DSA:1.10.287.130 - - - 256 318 1.7E-15
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 257 317 1.59497E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 81 166 6.7E-6
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 239 319 1.63E-14
Coils Coil Coil - - 295 318 -
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 366 476 2.3E-17
SUPERFAMILY SSF103190 Sensory domain-like IPR029151 Periplasmic sensor-like domain superfamily 64 179 2.0E-14
Pfam PF00672 HAMP domain IPR003660 HAMP domain 202 251 6.3E-9
Gene3D G3DSA:6.10.340.10 - - - 167 255 1.2E-8
PANTHER PTHR45436 SENSOR HISTIDINE KINASE YKOH - - 2 475 5.2E-65
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 319 474 4.9E-26
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 370 475 9.9E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.