Pseudomonas putida GB-1, PputGB1_1088
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppg02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR43848 | PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN POTI | - | - | 1 | 258 | 4.8E-60 |
| SUPERFAMILY | SSF161098 | MetI-like | IPR035906 | MetI-like superfamily | 10 | 257 | 2.35E-48 |
| CDD | cd06261 | TM_PBP2 | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | 65 | 251 | 1.20411E-14 |
| Pfam | PF00528 | Binding-protein-dependent transport system inner membrane component | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | 80 | 250 | 2.7E-14 |
| Gene3D | G3DSA:1.10.3720.10 | - | IPR035906 | MetI-like superfamily | 10 | 260 | 3.6E-39 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.