Pseudomonas putida GB-1, PputGB1_2157 (glcF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0051536 | iron-sulfur cluster binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1060.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppg00630 | Glyoxylate and dicarboxylate metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppg01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppg01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppg01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppg01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:1.10.1060.10:FF:000012 | Glycolate oxidase iron-sulfur subunit | - | - | 2 | 109 | 3.3E-50 |
| SUPERFAMILY | SSF54862 | 4Fe-4S ferredoxins | - | - | 20 | 119 | 9.63E-21 |
| Pfam | PF02754 | Cysteine-rich domain | IPR004017 | Cysteine-rich domain | 170 | 254 | 9.4E-13 |
| PIRSF | PIRSF000139 | Glc_ox_4Fe-4S | IPR012257 | Glycolate oxidase, iron-sulphur subunit | 5 | 409 | 6.7E-123 |
| PANTHER | PTHR32479 | GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT | - | - | 3 | 405 | 7.8E-96 |
| Gene3D | G3DSA:1.10.1060.10 | - | IPR009051 | Alpha-helical ferredoxin | 2 | 107 | 1.7E-15 |
| Pfam | PF02754 | Cysteine-rich domain | IPR004017 | Cysteine-rich domain | 303 | 386 | 3.8E-12 |
| Pfam | PF12838 | 4Fe-4S dicluster domain | IPR017896 | 4Fe-4S ferredoxin-type, iron-sulphur binding domain | 24 | 89 | 4.8E-12 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.