Pseudomonas putida GB-1, PputGB1_2234

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00032
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00032
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 313 329 9.4E-5
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 230 280 9.41E-7
Pfam PF01965 DJ-1/PfpI family IPR002818 DJ-1/PfpI 54 189 3.6E-15
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 246 329 6.4E-23
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 282 331 1.3E-11
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 298 313 9.4E-5
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 17 218 1.6E-50
Gene3D G3DSA:1.10.10.60 - - - 226 333 7.4E-29
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 20 211 5.53E-42
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 257 330 8.0E-22
PANTHER PTHR43130 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 21 268 3.2E-37
CDD cd03136 GATase1_AraC_ArgR_like - - 22 208 8.62248E-80

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.