Pseudomonas putida GB-1, PputGB1_2775

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 117 281 9.3E-7
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 750 765 4.5E-7
PANTHER PTHR36153 INNER MEMBRANE PROTEIN-RELATED - - 14 702 7.1E-109
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 716 808 1.4E-14
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 715 827 1.70205E-27
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 124 271 2.7E-9
Pfam PF14331 IcmF-related N-terminal domain IPR025743 IcmF-related, N-terminal domain 189 446 3.0E-73
SUPERFAMILY SSF103088 OmpA-like IPR036737 OmpA-like domain superfamily 707 827 1.44E-24
Gene3D G3DSA:3.30.1330.60 - IPR036737 OmpA-like domain superfamily 698 830 1.5E-31
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 719 741 4.5E-7
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 765 781 4.5E-7
Pfam PF06761 Intracellular multiplication and human macrophage-killing IPR009612 IcmF-related 498 696 7.1E-16
NCBIfam TIGR03348 JCVI: type VI secretion system membrane subunit TssM IPR017731 Type VI secretion system protein TssM1-like 18 559 1.5E-125

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.