Pseudomonas putida GB-1, PputGB1_3354

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0030256 type I protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01842
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01842
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0140359 ABC-type transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00664
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0030253 protein secretion by the type I secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01842
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01842
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00664
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01842 JCVI: type I secretion system permease/ATPase IPR010128 ATPase, type I secretion system, PrtD-like 17 557 0.0
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily 11 314 1.7E-29
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 357 543 1.4E-10
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 323 560 1.6E-68
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 349 495 4.0E-28
Pfam PF00664 ABC transporter transmembrane region IPR011527 ABC transporter type 1, transmembrane domain 33 280 9.0E-14
FunFam G3DSA:3.40.50.300:FF:001444 ABC transporter ATP-binding protein - - 326 558 6.9E-93
PANTHER PTHR24221 ATP-BINDING CASSETTE SUB-FAMILY B IPR039421 Type 1 protein exporter 33 555 1.6E-74
SUPERFAMILY SSF90123 ABC transporter transmembrane region IPR036640 ABC transporter type 1, transmembrane domain superfamily 5 319 7.46E-45
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 323 555 4.07E-62
FunFam G3DSA:1.20.1560.10:FF:000109 Alkaline protease secretion ATP-binding protein aprD - - 11 315 5.2E-108
CDD cd18586 ABC_6TM_PrtD_like IPR047957 Alkaline protease secretion ATP-binding protein AprD-like, 6TM domain 19 308 1.04287E-120

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.