Pseudomonas putida GB-1, PputGB1_5013

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01532
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051287 NAD binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00846
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02800
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042823 pyridoxal phosphate biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01532
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0048001 erythrose-4-phosphate dehydrogenase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01532
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg00750 Vitamin B6 metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43148 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family 7 341 2.5E-113
Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 - - 160 326 5.5E-116
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family 155 173 2.6E-24
Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain 167 323 1.9E-51
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 8 177 5.25E-52
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family 280 295 2.6E-24
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family 116 129 2.6E-24
FunFam G3DSA:3.30.360.10:FF:000002 Glyceraldehyde-3-phosphate dehydrogenase - - 160 326 2.4E-53
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family 239 256 2.6E-24
SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain - - 161 325 1.9E-57
PIRSF PIRSF000149 GAPDH IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family 5 346 4.6E-129
Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 8 109 8.0E-33
FunFam G3DSA:3.40.50.720:FF:000001 Glyceraldehyde-3-phosphate dehydrogenase - - 7 171 1.7E-44
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family 182 198 2.6E-24
SMART SM00846 gp_dh_n_7 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 7 161 1.2E-69
NCBIfam TIGR01532 JCVI: erythrose-4-phosphate dehydrogenase IPR006422 D-erythrose-4-phosphate dehydrogenase 8 336 0.0
Gene3D G3DSA:3.40.50.720 - - - 8 336 5.5E-116

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.