Pseudomonas putida S16, PPS_2847

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 765 781 3.3E-7
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 120 281 2.6E-6
SUPERFAMILY SSF103088 OmpA-like IPR036737 OmpA-like domain superfamily 707 827 3.53E-24
Pfam PF14331 IcmF-related N-terminal domain IPR025743 IcmF-related, N-terminal domain 189 446 1.9E-73
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 750 765 3.3E-7
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 715 827 2.00923E-28
NCBIfam TIGR03348 JCVI: type VI secretion system membrane subunit TssM IPR017731 Type VI secretion system protein TssM1-like 18 559 1.0E-126
Coils Coil Coil - - 90 110 -
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 719 741 3.3E-7
Pfam PF06761 Intracellular multiplication and human macrophage-killing IPR009612 IcmF-related 498 696 4.2E-16
Gene3D G3DSA:3.30.1330.60 - IPR036737 OmpA-like domain superfamily 698 830 3.7E-31
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 124 271 5.89E-9
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 716 809 3.4E-14
PANTHER PTHR36153 INNER MEMBRANE PROTEIN-RELATED - - 14 702 1.2E-110

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.