Pseudomonas putida S16, PPS_3273

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009231 riboflavin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00926
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00926
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt00740 Riboflavin metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF001259 RibA - - 1 371 4.7E-113
Gene3D G3DSA:3.40.50.10990 GTP cyclohydrolase II IPR036144 GTP cyclohydrolase II superfamily 206 368 7.0E-26
SUPERFAMILY SSF55821 YrdC/RibB IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily 2 202 3.89E-83
SUPERFAMILY SSF142695 RibA-like IPR036144 GTP cyclohydrolase II superfamily 205 368 3.92E-39
PANTHER PTHR21327 GTP CYCLOHYDROLASE II-RELATED - - 1 369 2.5E-91
FunFam G3DSA:3.90.870.10:FF:000001 Riboflavin biosynthesis protein RibBA - - 1 205 5.2E-93
NCBIfam TIGR00506 JCVI: 3,4-dihydroxy-2-butanone-4-phosphate synthase IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB 3 199 4.3E-70
Gene3D G3DSA:3.90.870.10 DHBP synthase - - 1 205 2.6E-86
Pfam PF00925 GTP cyclohydrolase II IPR032677 GTP cyclohydrolase II 210 366 1.1E-28
Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB 7 198 7.4E-79
Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB 1 203 37.500004

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.