Pseudomonas putida S16, PPS_4001

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0009378 four-way junction helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00031
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009379 Holliday junction helicase complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00084 JCVI: Holliday junction branch migration protein RuvA IPR000085 Holliday junction branch migration complex subunit RuvA 2 198 1.4E-60
Coils Coil Coil - - 114 134 -
CDD cd14332 UBA_RuvA_C IPR011114 Holliday junction DNA helicase RuvA, C-terminal 153 196 6.00037E-12
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 2 59 2.63E-17
Pfam PF01330 RuvA N terminal domain IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial 2 58 1.0E-20
Pfam PF14520 Helix-hairpin-helix domain - - 68 126 2.5E-17
Hamap MF_00031 Holliday junction branch migration complex subunit RuvA [ruvA]. IPR000085 Holliday junction branch migration complex subunit RuvA 1 199 29.571468
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 69 88 0.72
Gene3D G3DSA:1.10.150.20 - - - 63 137 6.3E-29
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 104 123 0.022
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 62 133 2.11E-22
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 62 3.6E-24
Gene3D G3DSA:1.10.8.10 - - - 152 199 4.5E-18
SUPERFAMILY SSF46929 DNA helicase RuvA subunit, C-terminal domain IPR036267 RuvA, C-terminal domain superfamily 152 198 1.83E-9
Pfam PF07499 RuvA, C-terminal domain IPR011114 Holliday junction DNA helicase RuvA, C-terminal 154 198 3.9E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.