Pseudomonas putida S16, PPS_4778

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016773 phosphotransferase activity, alcohol group as acceptor
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01603
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00125
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00125
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0005975 carbohydrate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01172
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016779 nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01603
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00125 JCVI: cytidyltransferase-like domain IPR004821 Cytidyltransferase-like domain 341 407 3.6E-16
Gene3D G3DSA:3.40.1190.20 - IPR029056 Ribokinase-like 2 308 5.7E-113
NCBIfam TIGR02199 JCVI: D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase IPR011914 RfaE bifunctional protein, domain II 331 472 9.7E-64
CDD cd01172 RfaE_like IPR011913 RfaE bifunctional protein, domain I 13 309 3.4905E-120
SUPERFAMILY SSF52374 Nucleotidylyl transferase - - 339 470 4.15E-25
Hamap MF_01603 Bifunctional protein HldE [hldE]. IPR023030 Bifunctional protein HldE 4 473 42.836182
FunFam G3DSA:3.40.1190.20:FF:000002 Bifunctional protein HldE - - 2 308 0.0
PANTHER PTHR46969 BIFUNCTIONAL PROTEIN HLDE - - 3 315 4.9E-121
NCBIfam TIGR02198 JCVI: D-glycero-beta-D-manno-heptose-7-phosphate kinase IPR011913 RfaE bifunctional protein, domain I 5 312 1.0E-123
Gene3D G3DSA:3.40.50.620 HUPs IPR014729 Rossmann-like alpha/beta/alpha sandwich fold 325 473 1.0E-39
Pfam PF00294 pfkB family carbohydrate kinase IPR011611 Carbohydrate kinase PfkB 13 303 1.8E-48
SUPERFAMILY SSF53613 Ribokinase-like IPR029056 Ribokinase-like 13 311 1.56E-59
FunFam G3DSA:3.40.50.620:FF:000028 Bifunctional protein HldE - - 319 473 5.7E-71
Pfam PF01467 Cytidylyltransferase-like IPR004821 Cytidyltransferase-like domain 344 435 5.6E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.